Lists all modules available to be loaded
Arguments
- filter
If provided, a character scalar will be used to filter the results. Only modules containing
filteras a substring will be returned.
Examples
module_avail()
#> [1] "7zip/15.14.1"
#> [2] "AlphaLink/1.0"
#> [3] "AreTomo/1.3.4"
#> [4] "CUDA8/caffe2/0.8.1"
#> [5] "CUDA8/tensorflow/1.1.0"
#> [6] "CUDA8/tensorflow/1.3.0rc0"
#> [7] "CUnit/2.1-3"
#> [8] "EMAN/2.3"
#> [9] "EMAN2/2.9"
#> [10] "EMBuilder/1.0"
#> [11] "EPU_group_AFIS/0.3"
#> [12] "FastFold/0.2.0"
#> [13] "Gctf/1.06"
#> [14] "Gctf/1.18cu10.1"
#> [15] "Gctf/1.18cu7.5"
#> [16] "Gctf/1.18cu8.0"
#> [17] "Gctf/1.18cu9.2"
#> [18] "H5toXDS/1.1.0"
#> [19] "HiC-Pro/2.11.4"
#> [20] "IGV/2.10.3"
#> [21] "IGV/2.17.4"
#> [22] "IGV/2.5.2"
#> [23] "IMOD/4.11.5"
#> [24] "IRFinder/1.2.0"
#> [25] "ImageMagick/6.9.11-22"
#> [26] "ImageMagick/7.0.9-5"
#> [27] "JAGS/4.0.0"
#> [28] "JAGS/4.3.0"
#> [29] "ModelAngelo/0.0.1"
#> [30] "MultiQC/1.10.1"
#> [31] "MultiQC/gmon.out"
#> [32] "NAMD-mpich/2.12"
#> [33] "NAMD-mpich/2.14"
#> [34] "NAMD-multicore-gpu/2.14"
#> [35] "NAMD-multicore/2.12"
#> [36] "NAMD-multicore/2.14"
#> [37] "NAMD-openmpi/2.12"
#> [38] "NAMD/2.12"
#> [39] "NAMD/2.13nb"
#> [40] "OpenFold/2.0.0"
#> [41] "R/3.3.3"
#> [42] "R/3.4.4"
#> [43] "R/3.5.2"
#> [44] "R/3.5.3"
#> [45] "R/3.6.0"
#> [46] "R/3.6.0m"
#> [47] "R/3.6.1"
#> [48] "R/3.6.1m"
#> [49] "R/3.6.2"
#> [50] "R/3.6.3"
#> [51] "R/4.0.0"
#> [52] "R/4.0.1"
#> [53] "R/4.0.2"
#> [54] "R/4.0.3"
#> [55] "R/4.0.4"
#> [56] "R/4.0.5"
#> [57] "R/4.1.0"
#> [58] "R/4.1.1"
#> [59] "R/4.1.2"
#> [60] "R/4.1.3"
#> [61] "R/4.2.0"
#> [62] "R/4.2.1"
#> [63] "R/4.2.2"
#> [64] "R/4.2.3"
#> [65] "R/4.3.0"
#> [66] "R/4.3.1"
#> [67] "R/4.3.2"
#> [68] "R/4.3.3"
#> [69] "R/4.4.0"
#> [70] "R/MKL/4.3.1"
#> [71] "R/MKL/4.4.0"
#> [72] "R/openBLAS/3.6.2"
#> [73] "R/openBLAS/4.2.1"
#> [74] "R/openBLAS/4.2.2"
#> [75] "R/openBLAS/4.2.3"
#> [76] "R/openBLAS/4.3.0"
#> [77] "R/openBLAS/4.3.1"
#> [78] "R/openBLAS/4.3.2"
#> [79] "R/openBLAS/4.3.3"
#> [80] "R/openBLAS/4.4.0"
#> [81] "RepeatMaker/4.1.2"
#> [82] "SNPsplit/0.2.0"
#> [83] "SPHIRE/1.1"
#> [84] "SPHIRE/1.3"
#> [85] "STAR/2.6.1c"
#> [86] "STAR/2.7.0a"
#> [87] "STAR/2.7.1a"
#> [88] "STAR/2.7.3a"
#> [89] "STAR/2.7.9a"
#> [90] "TRF/4.09.1"
#> [91] "Xvfb/1.19.5"
#> [92] "adxv/1.9.12"
#> [93] "alphafold/2.0.0"
#> [94] "alphafold/2.0.1"
#> [95] "alphafold/2.0.2"
#> [96] "alphafold/2.1.1.0"
#> [97] "alphafold/2.1.2.0"
#> [98] "alphafold/2.2.0.0"
#> [99] "alphafold/2.3.1"
#> [100] "alphafold/2.3.2"
#> [101] "anaconda3/2019.03"
#> [102] "anaconda3/2020.07"
#> [103] "anaconda3/4.0.0"
#> [104] "anaconda3/4.3.1"
#> [105] "anaconda3/latest"
#> [106] "annovar/2015-12-14"
#> [107] "apache-ant/1.9.7"
#> [108] "apptainer/1.0.0"
#> [109] "apptainer/1.1.0"
#> [110] "apptainer/1.1.8"
#> [111] "apptainer/1.1.9"
#> [112] "apptainer/1.2.3"
#> [113] "apptainer/1.2.3s"
#> [114] "aspera/3.5.4"
#> [115] "aspera/3.9.1"
#> [116] "aspera/3.9.6"
#> [117] "autoPROC/20211020"
#> [118] "autoPROC/20220608"
#> [119] "autoPROC/20230222"
#> [120] "autoPROC/20230726"
#> [121] "autoSHARP/2.8"
#> [122] "awscli/1.22.89"
#> [123] "awscli/2.1.25"
#> [124] "awscli/2.5.2"
#> [125] "axel/2.17.10"
#> [126] "bamUtil/1.0.14"
#> [127] "bamtools/2.4.1"
#> [128] "bazel/0.26.1"
#> [129] "bazel/1.2.1"
#> [130] "bcftools/1.12"
#> [131] "bcftools/1.13"
#> [132] "bcftools/1.14"
#> [133] "bcftools/1.15"
#> [134] "bcftools/1.16"
#> [135] "bcftools/1.17"
#> [136] "bcftools/1.19"
#> [137] "bcftools/1.20"
#> [138] "bcftools/1.3.1"
#> [139] "bcftools/1.6"
#> [140] "bcftools/1.7"
#> [141] "bcftools/1.9"
#> [142] "bcl-convert/3.10.5"
#> [143] "bcl-convert/3.9.3"
#> [144] "bcl2fastq/2.19.1"
#> [145] "bcl2fastq/2.20.0"
#> [146] "beast/1.8.3"
#> [147] "beast2/2.4.0"
#> [148] "bedops/2.4.26"
#> [149] "bedtools/2.25.0"
#> [150] "bedtools/2.26.0"
#> [151] "bedtools/2.31.1"
#> [152] "binutils/2.35.2-gcc-4.8.5"
#> [153] "binutils/2.35.2-gcc-9.1.0"
#> [154] "biobambam2/2.0.182-gcc9.1.0"
#> [155] "bismark/0.16.1"
#> [156] "bismark/0.19.0"
#> [157] "bismark/0.19.1"
#> [158] "bismark/0.20.0"
#> [159] "boost/1.55.0"
#> [160] "boost/1.58.0"
#> [161] "boost/1.60.0"
#> [162] "boost/1.66.0"
#> [163] "boost/1.72.0-gcc-11.3.0"
#> [164] "bowtie/1.1.2"
#> [165] "bowtie2/2.2.9"
#> [166] "bowtie2/2.3.2"
#> [167] "bowtie2/2.3.4.1"
#> [168] "bowtie2/2.4.4"
#> [169] "bpipe/0.9.9.2"
#> [170] "breakdancer/1.1.2"
#> [171] "breakdancer/1.4.5"
#> [172] "bsoft/2.1.0"
#> [173] "buster/20211020"
#> [174] "buster/20220608"
#> [175] "buster/20230217"
#> [176] "bwa/0.7.13"
#> [177] "bwa/0.7.15"
#> [178] "bwa/0.7.17"
#> [179] "bwtool/1.0"
#> [180] "bzip2/1.0.6"
#> [181] "caffe2/0.8.1"
#> [182] "canu/1.3"
#> [183] "canu/1.5"
#> [184] "cbflib/0.9.6"
#> [185] "ccp4/7.1"
#> [186] "ccp4/8.0"
#> [187] "ccpem/1.5.0"
#> [188] "cellprofiler/4.2.1"
#> [189] "cellprofiler/4.2.4"
#> [190] "cellranger-arc/1.0.1"
#> [191] "cellranger-arc/2.0.2"
#> [192] "cellranger-atac/1.0.0"
#> [193] "cellranger-atac/1.2.0"
#> [194] "cellranger-atac/2.1.0"
#> [195] "cellranger/2.2.0"
#> [196] "cellranger/3.0.1"
#> [197] "cellranger/3.0.2"
#> [198] "cellranger/3.1.0"
#> [199] "cellranger/4.0.0"
#> [200] "cellranger/5.0.0"
#> [201] "cellranger/6.0.0"
#> [202] "cellranger/6.1.2"
#> [203] "cellranger/7.0.0"
#> [204] "cellranger/7.1.0"
#> [205] "cellranger/8.0.0"
#> [206] "cellsnp-lite/1.2.0"
#> [207] "chimera/1.11"
#> [208] "chimerax/0.8"
#> [209] "chimerax/0.9"
#> [210] "chimerax/0.93"
#> [211] "chimerax/1.1"
#> [212] "chimerax/1.3"
#> [213] "circos/0.69"
#> [214] "circos/0.69-9"
#> [215] "cistem/1.0.0-beta"
#> [216] "clara-parabricks/4.0.1-1"
#> [217] "clara-parabricks/4.3.0-1"
#> [218] "clover/2015-08-28"
#> [219] "cluster-utils/18.08.1"
#> [220] "cmake/3.25.1"
#> [221] "cnvnator/0.3.3"
#> [222] "computecpp/1.0.5"
#> [223] "coot/0.8.8"
#> [224] "coot/0.8.9"
#> [225] "coot/0.8.9.1"
#> [226] "crYOLO/1.9.2"
#> [227] "crYOLO/1.9.7"
#> [228] "cryoEF/1.1.0"
#> [229] "cryoem-utils/0.1.0"
#> [230] "ctffind/4.1.13"
#> [231] "ctffind/4.1.14"
#> [232] "ctffind/4.1.5"
#> [233] "cuda/10.0"
#> [234] "cuda/10.1"
#> [235] "cuda/10.2"
#> [236] "cuda/11.0"
#> [237] "cuda/11.1"
#> [238] "cuda/11.2"
#> [239] "cuda/11.3.1"
#> [240] "cuda/11.4"
#> [241] "cuda/11.5.1"
#> [242] "cuda/11.6.2"
#> [243] "cuda/11.7.1"
#> [244] "cuda/11.8"
#> [245] "cuda/12.2"
#> [246] "cuda/8.0"
#> [247] "cuda/9.2"
#> [248] "cudnn/10.1-7.6.5"
#> [249] "cudnn/11.2-8.1.1.33"
#> [250] "cudnn/11.3.1-8.4.0"
#> [251] "cudnn/11.3.1-8.6.0.162"
#> [252] "cudnn/11.3.1-8.9.5"
#> [253] "cudnn/11.x-8.9.7.29"
#> [254] "cudnn/11.x-9.0.0.312"
#> [255] "cudnn/12.x-8.9.7.29"
#> [256] "curl/7.65.0"
#> [257] "cutadapt/2.9"
#> [258] "cutadapt/3.4"
#> [259] "cutadapt/3.7"
#> [260] "cutadapt/4.0"
#> [261] "dalilite/5.1"
#> [262] "darknet/61c9d02cu10.0"
#> [263] "dectris-neggia/1.2.0"
#> [264] "deepEMhancer/0.15"
#> [265] "deeptools/3.5.1"
#> [266] "demuxlet/noversion"
#> [267] "depot_tools/6c7b829"
#> [268] "dials/3.10.0"
#> [269] "dials/3.12.0"
#> [270] "dials/3.17.0"
#> [271] "dorado/0.1.1-gcc-9.1.0"
#> [272] "dorado/0.2.1-gcc-9.1.0"
#> [273] "dorado/0.3.0"
#> [274] "dorado/0.3.2"
#> [275] "dorado/0.3.4"
#> [276] "dorado/0.4.1"
#> [277] "dorado/0.5.0"
#> [278] "dorado/0.5.2"
#> [279] "dorado/6.0.0"
#> [280] "dotnet/2.1.809"
#> [281] "dotnet/3.1.412"
#> [282] "dotnet/6.0.408"
#> [283] "dotnet/7.0.305"
#> [284] "doublecmd/0.9.10.gtk2"
#> [285] "dua-cli/2.17.8"
#> [286] "dua-cli/2.19.0"
#> [287] "duck/6.9.3"
#> [288] "duckdb/0.6.1"
#> [289] "edirect/15.0"
#> [290] "egaclient/2.2.2"
#> [291] "eigen/3.4.0"
#> [292] "eiger2cbf/160415"
#> [293] "eiger2cbf/latest"
#> [294] "elbencho/1.7-1cu10.1"
#> [295] "ensembl-vep/107.0"
#> [296] "ensembl-vep/89.0"
#> [297] "ensembl-vep/89.8"
#> [298] "ensembl-vep/98.3"
#> [299] "evince/3.28.2"
#> [300] "fastqc/0.11.5"
#> [301] "fastqc/0.11.8"
#> [302] "fastx-toolkit/0.0.13"
#> [303] "feh/3.6.3"
#> [304] "ffmpeg/3.4"
#> [305] "fftw/3.3.9"
#> [306] "fio/3.16"
#> [307] "fio/3.19"
#> [308] "flash/1.2.11"
#> [309] "fluxbox/1.3.7"
#> [310] "freebayes/1.1.0"
#> [311] "freebayes/1.2.0"
#> [312] "gatk/4.2.4.1"
#> [313] "gatk/4.2.5.0"
#> [314] "gautomatch/0.56cu10.1"
#> [315] "gautomatch/0.56cu8.0"
#> [316] "gcc/10.3.0"
#> [317] "gcc/11.1.0"
#> [318] "gcc/11.2.0"
#> [319] "gcc/11.3.0"
#> [320] "gcc/12.2.0"
#> [321] "gcc/6.3.0"
#> [322] "gcc/7.1.0"
#> [323] "gcc/7.3.0"
#> [324] "gcc/8.1.0"
#> [325] "gcc/8.2.0"
#> [326] "gcc/8.3.0"
#> [327] "gcc/9.1.0"
#> [328] "gdal/2.4.4"
#> [329] "gdal/3.6.2"
#> [330] "gem/3.0"
#> [331] "gemini/0.20.1"
#> [332] "gencore/0.17.2"
#> [333] "genetorrent/3.8.7"
#> [334] "genozip/12.0.11"
#> [335] "geos/3.7.0"
#> [336] "germline/1.5.1"
#> [337] "gh-cli/2.0"
#> [338] "gh-cli/2.49.2"
#> [339] "git/2.37.1"
#> [340] "glew/1.9.0"
#> [341] "glib/1.2.10"
#> [342] "glpk/4.65"
#> [343] "glpk/5.0"
#> [344] "gmap-gsnap/2017-05-08"
#> [345] "gmap-gsnap/2017-06-16"
#> [346] "gmp/6.3.0"
#> [347] "gnuplot/5.2.6"
#> [348] "go/1.13.15"
#> [349] "go/1.19.4"
#> [350] "go/1.20.2"
#> [351] "google-cloud-sdk/194.0.0"
#> [352] "google-cloud-sdk/348.0.0"
#> [353] "google-cloud-sdk/437.0.1"
#> [354] "gradle/4.3"
#> [355] "graphmap/0.3.1"
#> [356] "graphmap/0.5.1"
#> [357] "graphmap/0.5.2"
#> [358] "gridss/2.11.1"
#> [359] "gridss/2.13.2"
#> [360] "gromacs/2021.2"
#> [361] "gromacs/2023.3"
#> [362] "gromacs/2023.3_cuda11.7.1"
#> [363] "gromacs/4.5.5_cryo_fit"
#> [364] "groovy/4.0.0"
#> [365] "gsl/2.4"
#> [366] "gsl/2.6"
#> [367] "guppy-cpu/2.3.7"
#> [368] "guppy-cpu/3.1.5"
#> [369] "guppy-cpu/3.2.1"
#> [370] "guppy-cpu/3.2.2"
#> [371] "guppy-cpu/3.2.4"
#> [372] "guppy-cpu/3.3.0"
#> [373] "guppy-cpu/3.6.1"
#> [374] "guppy-cpu/4.0.15"
#> [375] "guppy-gpu/2.3.1"
#> [376] "guppy-gpu/2.3.7"
#> [377] "guppy-gpu/3.1.5"
#> [378] "guppy-gpu/3.2.1"
#> [379] "guppy-gpu/3.2.2"
#> [380] "guppy-gpu/3.2.4"
#> [381] "guppy-gpu/3.3.0"
#> [382] "guppy-gpu/3.6.1"
#> [383] "guppy-gpu/4.0.15"
#> [384] "guppy-gpu/6.2.1"
#> [385] "guppy-gpu/6.3.7"
#> [386] "gzip/1.10"
#> [387] "haplopainter/1.043"
#> [388] "hdf4/4.2.11"
#> [389] "hdf5-mpich/1.10.5_3.3"
#> [390] "hdf5/1.10.5"
#> [391] "hdf5/1.12.2"
#> [392] "hdf5/1.14.0"
#> [393] "hdf5/1.8.16"
#> [394] "hdf5/1.8.20"
#> [395] "hdf5/1.8.21"
#> [396] "hdfview/2.11.0"
#> [397] "hisat2/2.0.3"
#> [398] "hisat2/2.0.5"
#> [399] "hisat2/2.2.1"
#> [400] "hmmer/2.3.2"
#> [401] "hmmer/3.1b2"
#> [402] "hmmer/3.1b2-mpi"
#> [403] "hmmer/3.2.1"
#> [404] "hmmer/3.3.2"
#> [405] "homer/4.11"
#> [406] "hpl/2.3"
#> [407] "htop/2.0.2"
#> [408] "htslib/1.10.2"
#> [409] "htslib/1.12"
#> [410] "htslib/1.13"
#> [411] "htslib/1.14"
#> [412] "htslib/1.15"
#> [413] "htslib/1.17"
#> [414] "htslib/1.19"
#> [415] "htslib/1.19.1"
#> [416] "htslib/1.20"
#> [417] "htslib/1.3.1"
#> [418] "htslib/1.3.2"
#> [419] "htslib/1.4.1"
#> [420] "htslib/1.5"
#> [421] "htslib/1.6"
#> [422] "htslib/1.7"
#> [423] "htslib/1.9"
#> [424] "icewm/2.8.0"
#> [425] "iftop/1.0"
#> [426] "imp/2.5.0"
#> [427] "intel-ipp/2019.5.281"
#> [428] "intel-mkl/2019.3.199"
#> [429] "intel-mpi/2019.3.199"
#> [430] "intel-tbb/2019.3.199"
#> [431] "intel_mkl_2019/2019.5.075"
#> [432] "intel_mpi_2019/2019.5.075"
#> [433] "intel_mpi_2019/default_pipeline.star"
#> [434] "ior-slurm/3.2.1mpich3.3"
#> [435] "ior-slurm/3.2.1openMPI4.0.2"
#> [436] "ior/3.2.1mpio4.0.1"
#> [437] "iozone/3.491"
#> [438] "java/1.7.0_79"
#> [439] "java/1.8.0_131"
#> [440] "java/1.8.0_151"
#> [441] "java/1.8.0_211"
#> [442] "java/1.8.0_92"
#> [443] "jbrowse-desktop/2.3.2"
#> [444] "jellyfish/2.3.1"
#> [445] "joe/4.6"
#> [446] "joe/n"
#> [447] "julia/0.6.4"
#> [448] "julia/1.0.1"
#> [449] "julia/1.5.3"
#> [450] "julia/1.7.3"
#> [451] "julia/1.9.2"
#> [452] "juncBASE/1.2-beta"
#> [453] "jupyter-config/1.0"
#> [454] "jupyter/latest"
#> [455] "jupyterlab/latest"
#> [456] "kallisto/0.44.0"
#> [457] "kallisto/0.46.0"
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